Browse Skills — Page 47

bio-write-sequences

GPTomics/bioSkills

Write biological sequences to files (FASTA, FASTQ, GenBank, EMBL) using Biopython Bio.SeqIO. Use when saving sequences, creating new sequence files, or outputting modified records.

bioassay_analysis

InternScience/scp

Bioassay Data Analysis - Analyze bioassay data: PubChem assay summary, ChEMBL activity search, compound properties, and target info. Use this skill for bioassay science tasks involving get assay summary by cid search activity calculate mol basic info get target by name. Combines 4 tools from 3 SCP server(s).

biobankjapan-phewas-skill

openai/plugins

Fetch compact BioBank Japan PheWAS summaries for single variants by accepting rsID, GRCh38, or GRCh37 input and resolving to the required GRCh37 query. Use when a user wants concise BBJ association results for one variant

biodbnet-api

aipoch/medical-research-skills

Access bioDBnet REST services for biological identifier conversion, pathway retrieval, and ortholog mapping. Use when you need to convert gene/protein IDs, find pathways, or retrieve biological annotations via bioDBnet.

biogeochemical-cycles

Tibsfox/gsd-skill-creator

Carbon, nitrogen, phosphorus, sulfur, and water cycles — pools, fluxes, residence times, and anthropogenic perturbations. Covers the fast and slow carbon cycles, the Haber-Bosch disruption of the nitrogen cycle, the phosphorus bottleneck, the hydrological cycle, ocean acidification, and the planetary boundaries framework. Use when tracking chemical elements through atmosphere, hydrosphere, biosphere, and lithosphere; computing pool sizes and fluxes; or evaluating anthropogenic perturbations to global cycles.

biogrid-orcs

aipoch/medical-research-skills

Accesses BioGRID ORCS CRISPR screen data (organisms, screens, scores). Invoke when user needs to search CRISPR screens, get vocabulary, or retrieve gene scores.

bioinformatics

NousResearch/hermes-agent

Gateway to 400+ bioinformatics skills from bioSkills and ClawBio. Covers genomics, transcriptomics, single-cell, variant calling, pharmacogenomics, metagenomics, structural biology, and more. Fetches domain-specific reference material on demand.

bioinformatics-translational-opportunity-finder

aipoch/medical-research-skills

Identifies translationally meaningful paths for bioinformatics findings by mapping omics or computational discoveries to diagnosis, stratification, prognosis, treatment-response, monitoring, or target-nomination use cases, while auditing bridge evidence, assayability, and validation burden. Use this skill when a user wants to know whether a bioinformatics finding can be framed as a stronger translational topic without overclaiming clinical relevance. Always separate statistical signal from translational value, and never imply clinical utility, targetability, or validation depth without explicit evidence support.

biological-function-mapping

yogsoth-ai/de-anthropocentric-research-engine

Map technical functions to biological systems. Orchestrates problem-biologization → organism-discovery → functional-model-biology.

biological-strategy-extraction

yogsoth-ai/de-anthropocentric-research-engine

Extract strategy principles from organisms. Identify mechanism-level details of how biological systems achieve their function.

biological-systems-reasoning

swaruplab/operon

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biologize-and-discover

yogsoth-ai/de-anthropocentric-research-engine

Biomimicry Design Spiral: Define→Biologize→Discover→Abstract→Emulate. Translate technical challenges into biological questions and find nature's solutions.

biomarker_discovery

InternScience/scp

Biomarker Discovery Pipeline - Discover biomarkers: TCGA differential expression, NCBI gene data, OpenTargets associations, and clinical relevance. Use this skill for precision medicine tasks involving tcga differential expression analysis get gene metadata by gene name get associated targets by disease efoId clinvar search. Combines 4 tools from 4 SCP server(s).

biomarker-landscape-scanner

aipoch/medical-research-skills

Scans the biomarker landscape of a disease area by biomarker type, clinical/research use case, evidence layer, validation status, and maturity level. Use this skill when a user wants a field-level biomarker evidence map rather than a generic literature summary. Always separate exploratory biomarkers from externally validated or clinically embedded biomarkers, and never imply clinical maturity without explicit evidence support.

biomcp

genomoncology/biomcp

Search and retrieve biomedical data - genes, variants, clinical trials, diagnostic tests, articles, drugs, diseases, pathways, proteins, adverse events, pharmacogenomics, and phenotype-disease matching. Use for gene function, variant pathogenicity, trials, diagnostics, drug safety, pathway context, disease workups, and literature evidence.

biome

bobmatnyc/claude-mpm-skills

Biome - Fast all-in-one toolchain for web projects (linter + formatter in Rust, 100x faster than ESLint)

biome-configuration

TheBushidoCollective/han

Use when biome configuration including biome.json setup, schema versions, VCS integration, and project organization.

biome-formatting

TheBushidoCollective/han

Use when formatting JavaScript/TypeScript code with Biome's fast formatter including patterns, options, and code style management.

biome-linting

TheBushidoCollective/han

Use when applying Biome's linting capabilities, rule categories, and code quality enforcement to JavaScript/TypeScript projects.

biome-worlds

arjun988/blender-skills

Biome and setting art direction for Blender covering underwater, desert, arctic, jungle, underground, and floating-island environments.

biomed-outline-generator

aipoch/medical-research-skills

Generates structured biomedical outlines for review articles, discussion sections, and thesis proposals. Use when a user provides biomedical keywords, results/discussion text, or a proposal title plus background and needs a directly usable academic writing scaffold.

biomedical-api-router

swaruplab/operon

Biomedical OS Core & MCP Server

biomedical-literature-search

swaruplab/operon

Complete biomedical information search combining PubMed, preprints, clinical trials, and FDA drug labels. Powered by Valyu semantic search.

biomedical-search-strategy-builder

aipoch/medical-research-skills

Builds professional search strategies for PubMed, Embase, Web of Science, and similar databases. Use when a user needs to construct a MeSH-based Boolean query, design a systematic review search, expand a concept with synonyms, apply study-type or date filters, or adapt a query across multiple databases. Also triggers when the user says "help me search for papers on X", "build a search strategy", "what are the MeSH terms for", or "I need a systematic review search string".

biomedical-web-search

InternScience/scp

Search biomedical literature and web content using Tavily search engine for research and clinical information.

biomimicry

yogsoth-ai/de-anthropocentric-research-engine

Biomimicry Campaign — discover transferable solutions from biological systems via Design Spiral, BioTRIZ, functional analogy, ecosystem patterns, and evolution strategies.

biomimicry-synthesis

yogsoth-ai/de-anthropocentric-research-engine

Synthesize all biomimicry outputs into a structured idea report. Integrate biological strategies, design principles, and technical solutions.

biopython

K-Dense-AI/scientific-agent-skills

Comprehensive molecular biology toolkit. Use for sequence manipulation, file parsing (FASTA/GenBank/PDB), phylogenetics, and programmatic NCBI/PubMed access (Bio.Entrez). Best for batch processing, custom bioinformatics pipelines, BLAST automation. For quick lookups use gget; for multi-service integration use bioservices.

biopython-advanced

aipoch/medical-research-skills

Advanced Biopython modules for motifs, population genetics, sequence utilities, restriction analysis, clustering, and GenomeDiagram visualization; use when you need extended bioinformatics analysis beyond basic sequence I/O and alignment.

biopython-alignment

aipoch/medical-research-skills

Sequence alignment and alignment file processing with Biopython (Bio.Align/Bio.AlignIO), triggered when you need global/local pairwise alignment, MSA read/write/format conversion, or alignment statistics/filtering.

biopython-entrez

aipoch/medical-research-skills

Use Bio.Entrez to access NCBI databases (e.g., PubMed/GenBank) for searching, fetching summaries, and downloading records when your workflow needs to call the NCBI E-utilities API over the network.

biopython-molecular-biology

jaechang-hits/SciAgent-Skills

Molecular biology toolkit: sequence manipulation, FASTA/GenBank/PDB I/O, NCBI Entrez, BLAST automation, pairwise/MSA alignment, Bio.PDB, phylogenetic trees. Use for batch processing, custom pipelines, format conversion, PubMed/GenBank queries. For quick gene lookups use gget; for multi-service REST APIs use bioservices.

biopython-phylo

aipoch/medical-research-skills

Use Bio.Phylo to read/write phylogenetic trees and perform visualization and statistics; use when tree parsing/conversion, pruning/rerooting, distance calculation, or plotting is required.

biopython-sequence-analysis

jaechang-hits/SciAgent-Skills

Biopython sequence analysis: parse FASTA/FASTQ/GenBank/GFF (SeqIO), NCBI Entrez (esearch/efetch/elink), remote/local BLAST, pairwise/MSA alignment (PairwiseAligner, MUSCLE/ClustalW), phylogenetic trees (Phylo). Use for gene family studies, phylogenomics, comparative genomics, NCBI pipelines. For PCR/restriction/cloning use biopython-molecular-biology; for SAM/BAM use pysam.

biopython-sequence-io

aipoch/medical-research-skills

Use Biopython to read/write/convert biological sequence files (FASTA/GenBank/FASTQ, etc.) and perform basic sequence operations; use when you need reliable sequence I/O, lightweight sequence manipulation, or scalable processing of large sequence datasets.

biopython-structure

aipoch/medical-research-skills

Use Bio.PDB to parse and analyze protein structures (PDB/mmCIF) for structural bioinformatics tasks; use when you need structure parsing, geometry calculations, or structural comparison/superposition.

biopython-v2

diegosouzapw/awesome-omni-skills

Biopython: Computational Molecular Biology in Python workflow skill. Use this skill when the user needs Biopython is a comprehensive set of freely available Python tools for biological computation. It provides functionality for sequence manipulation, file I/O, database access, structural bioinformatics, phylogenetics, and many other bioinformatics tasks and the operator should preserve the upstream workflow, copied support files, and provenance before merging or handing off.

biorxiv-database

jaechang-hits/SciAgent-Skills

Query bioRxiv/medRxiv preprints via REST API. Search by DOI, category, or date range; retrieve metadata (title, abstract, authors, category, DOI, version history) and PDFs. No auth. For peer-reviewed biomedical use pubmed-database; broader scholarly search use openalex-database.

biorxiv-skill

openai/plugins

Submit compact bioRxiv and medRxiv API requests for details, publication-linkage, and DOI lookups. Use when a user wants concise preprint metadata summaries

biosample_genomics

InternScience/scp

BioSample & Genome Cross-Reference - Cross-reference biosample and genome data: NCBI biosample, genome report, sequence reports, and taxonomy. Use this skill for genomics tasks involving get biosample report get genome dataset report by accession get genome sequence reports get taxonomy. Combines 4 tools from 1 SCP server(s).

bioservices

K-Dense-AI/scientific-agent-skills

Unified Python interface to 40+ bioinformatics services. Use when querying multiple databases (UniProt, KEGG, ChEMBL, Reactome) in a single workflow with consistent API. Best for cross-database analysis, ID mapping across services. For quick single-database lookups use gget; for sequence/file manipulation use biopython.

bioservices-multi-database

jaechang-hits/SciAgent-Skills

>

bioskills

GPTomics/bioSkills

Installs 425 bioinformatics skills covering sequence analysis, RNA-seq, single-cell, variant calling, metagenomics, structural biology, and 56 more categories. Use when setting up bioinformatics capabilities or when a bioinformatics task requires specialized skills not yet installed.

biostatistics

mkurman/zorai

Medical biostatistics hypothesis testing toolkit: t-tests, ANOVA, chi-square, Fisher exact, Mann-Whitney, Kruskal-Wallis, sample size calculation, power analysis, multiple testing correction, survival analysis, and clinical trial biostatistics.

biostudies-arrayexpress-skill

openai/plugins

Submit compact BioStudies and ArrayExpress API requests for free-text search and accession-based study retrieval. Use when a user wants concise BioStudies summaries

biotech-pitch-deck-narrative

aipoch/medical-research-skills

Use biotech-pitch-deck-narrative for academic writing workflows that need structured investor-facing storytelling, explicit assumptions, and clear output boundaries.

biotriz-principle-selection

yogsoth-ai/de-anthropocentric-research-engine

Select applicable BioTRIZ principles for a given contradiction. Map to biological cases.

biotriz-resolution

yogsoth-ai/de-anthropocentric-research-engine

BioTRIZ: biological 40 principles + bio contradiction matrix. Resolve technical contradictions using biological inventive principles.

birch-html

huggingface/research-agent

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bird

TermiX-official/cryptoclaw

X/Twitter CLI for reading, searching, posting, and engagement via cookies.

bird-observation

Tibsfox/gsd-skill-creator

Birding by sight and sound — gestalt, song and call vocabulary, behavioral and habitat clues, and the discipline of producing eBird-grade records. Covers the vocabulary of bird field marks, the primary categories of vocalization, the habits of habitat-filtering, and the protocol for submitting records to a citizen-science database without degrading data quality. Use when the task is bird-specific observation or record-keeping.

birdeye

sendaifun/skills

Complete Birdeye API integration for real-time DeFi data across Solana and 15 other chains. Use for token prices, OHLCV charts, market discovery, on-chain trader intelligence, holder analysis, wallet portfolio & P&L, and WebSocket streams for live prices and whale alerts.

birth

Soul-Brews-Studio/arra-oracle-skills-cli

Prepare Oracle birth props for a new repo — Issue #1, MCP thread, identity data. Use when user says "birth", "new oracle", "prepare repo", or wants to bootstrap a new Oracle before /awaken.

bisociation-network-construction

yogsoth-ai/de-anthropocentric-research-engine

Build multi-domain bridging concept network. Creates a network of collision points between multiple thinking matrices.

bitbucket

TerminalSkills/skills

>-

bitbucket-automation

benjaminasterA/antigravity-awesome-skills

Automate Bitbucket repositories, pull requests, branches, issues, and workspace management via Rube MCP (Composio). Always search tools first for current schemas.

bitbucket-automation-v2

diegosouzapw/awesome-omni-skills

Bitbucket Automation via Rube MCP workflow skill. Use this skill when the user needs Automate Bitbucket repositories, pull requests, branches, issues, and workspace management via Rube MCP (Composio). Always search tools first for current schemas and the operator should preserve the upstream workflow, copied support files, and provenance before merging or handing off.

bitbucket-migration

github/actions-migrations-via-copilot

Bitbucket Pipelines migration to GitHub Actions — syntax mappings and the migration report template for Pipelines, Pipes, parallel steps, branch/pull-request workflows, deployments, variables. Load with `migration-core` when migrating Bitbucket Pipelines sources to GitHub Actions.

bitbucket-webhooks

hookdeck/webhook-skills

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bitquery-automation

ComposioHQ/awesome-claude-skills

"Automate Bitquery tasks via Rube MCP (Composio). Always search tools first for current schemas."

bitrix

vm0-ai/vm0-skills

Bitrix24 CRM API. Use when user mentions "Bitrix", "CRM", "Bitrix24 contacts",

bits-and-bolts

openai/mcp-extensions

Browse, inspect, and pick reusable CAD parts with the Bits & Bolts plugin.

bitwarden-automation

ComposioHQ/awesome-claude-skills

"Automate Bitwarden tasks via Rube MCP (Composio). Always search tools first for current schemas."

biz-scan

softspark/ai-toolkit

Scans codebase for revenue opportunities, KPIs, monetization gaps. Triggers: business metrics, KPI, analytics gaps, monetization, revenue.

bkend-auth

popup-studio-ai/bkit-claude-code

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bkend-cookbook

popup-studio-ai/bkit-claude-code

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bkend-data

popup-studio-ai/bkit-claude-code

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bkend-quickstart

popup-studio-ai/bkit-claude-code

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bkend-storage

popup-studio-ai/bkit-claude-code

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bkit

popup-studio-ai/bkit-claude-code

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bkit-evals

popup-studio-ai/bkit-claude-code

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bkit-explore

popup-studio-ai/bkit-claude-code

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bkit-rules

popup-studio-ai/bkit-claude-code

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bkit-templates

popup-studio-ai/bkit-claude-code

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bkn-anchor

kweaver-ai/kweaver-dip

将业务规则 Skill 锚定为 BKN 网络中的孤悬对象类。

bkn-archive

kweaver-ai/kweaver-dip

全局归档协议 — 内化自 archive-protocol。提供 ARCHIVE_ID/TIMESTAMP 生成、双轨归档路径、回读校验与状态回执。

bkn-backfill

kweaver-ai/kweaver-dip

将绑定/映射结果写回 .bkn 文件。

bkn-bind

kweaver-ai/kweaver-dip

为 BKN 对象匹配数据视图，输出绑定决议。

bkn-creator

kweaver-ai/kweaver-dip

>-

bkn-distribute

kweaver-ai/kweaver-dip

将业务规则 Skill 分发到多个 AI 平台本地目录，用户按需选择目标平台。

bkn-doctor

kweaver-ai/kweaver-dip

建模质量诊断与多轮收敛。主路径不稳定时介入。

bkn-domain

kweaver-ai/kweaver-dip

评分式领域识别。从业务文本判断所属领域。

bkn-draft

kweaver-ai/kweaver-dip

将确认后的建模清单生成 .bkn 文件。

bkn-env

kweaver-ai/kweaver-dip

BKN 执行前环境就绪检查与 bootstrap 判定。

bkn-extract

kweaver-ai/kweaver-dip

从文本提取对象/关系/动作，输出四分组结构化清单。

bkn-kweaver

kweaver-ai/kweaver-dip

>-

bkn-map

kweaver-ai/kweaver-dip

属性到字段映射 + 覆盖率计算 + 完备性放行。

bkn-modeling-advisor

kweaver-ai/kweaver-dip

指导业务知识网络（BKN）建模，输出符合 BKN 2.0.0 的对象类型、关系类型、操作类型、风险类型与概念分组定义。适用于用户提出本体设计、知识网络建模、实体关系梳理、Action 设计、Schema 评审、从文档提取初稿或扩展现有 BKN 的场景。

bkn-relation-bind

kweaver-ai/kweaver-dip

基于对象绑定结果判定关系类型，绑定中间视图（data_view 类型）。

bkn-report

kweaver-ai/kweaver-dip

生成阶段报告或最终归档报告。

bkn-review

kweaver-ai/kweaver-dip

网络质量评审、评分与调整分发。闭环关键。

bkn-rules

kweaver-ai/kweaver-dip

从 PRD/对话/建模中提取业务规则，生成可复用的业务规则 Skill。必执行。

bkn-skillgen

kweaver-ai/kweaver-dip

分析技能包能力缺口，判断是否需要新 skill，生成草案。

bkn-test

kweaver-ai/kweaver-dip

生成测试集与验证用例。三种模式：schema_review / rules_verification / qa_verify。

bkt

avivsinai/bitbucket-cli

Bitbucket CLI for Data Center and Cloud. Use when users need to manage repositories, pull requests, branches, issues, webhooks, or pipelines in Bitbucket. Triggers include "bitbucket", "bkt", "pull request", "PR", "repo list", "branch create", "Bitbucket Data Center", "Bitbucket Cloud", "keyring timeout".

blackbaud-automation

ComposioHQ/awesome-claude-skills

"Automate Blackbaud tasks via Rube MCP (Composio). Always search tools first for current schemas."

blackboard-automation

ComposioHQ/awesome-claude-skills

"Automate Blackboard tasks via Rube MCP (Composio). Always search tools first for current schemas."

blackbox

NousResearch/hermes-agent

Delegate coding tasks to Blackbox AI CLI agent. Multi-model agent with built-in judge that runs tasks through multiple LLMs and picks the best result. Requires the blackbox CLI and a Blackbox AI API key.

blameless-postmortem

Tibsfox/gsd-skill-creator

Google SRE-style blameless postmortem authoring. Structure, timeline construction, contributing-factor extraction, action-item discipline, and the cultural practices that make postmortems produce learning rather than theater. Use when writing a postmortem after an incident, reviewing a draft postmortem, running a postmortem review meeting, building a postmortem template, or teaching a team how to write postmortems that actually improve the system. Complements rca-human-factors (for the "why people did what they did" analysis) and the rca-classical-methods / rca-systems-theoretic / rca-causal-inference / rca-distributed-systems skills (which supply the investigation techniques that populate the postmortem's analysis section).

blast_protein_analysis

InternScience/scp

BLAST & Protein Analysis Pipeline - BLAST search followed by comprehensive protein analysis: BLAST, then structure prediction, properties, and function. Use this skill for sequence bioinformatics tasks involving blast search pred protein structure esmfold calculate protein sequence properties predict protein function. Combines 4 tools from 4 SCP server(s).